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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67869485_67869722_R

Intron Information:

Intron Rank:
150471
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
67869485 - 67869722
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAAAA
5'SS Class:
major
3'SS Sequence:
CTGAATCAAGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTTTTCTGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
76.9
33.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
57.7
0.17
1.1
52.2
41.4
Minor 5ss
28.2
-2.5
2.7
31.6
42.2
Minor BPS
69.3
0.59
1.4
75.75
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028449
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047034
67864279 - 67869771
5493
ENSAPLT00000028894
67856232 - 67869771
13540