About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6788617_6790285_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6788617 - 6790285
Intron Length:
1669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
CACAATGCATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CTTTCCTCACAA
Flanking Amino Acid:
IDVQALFEPTGHCWAHHRCA
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
51.1
0.03
1
47.9
39.7
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
52.8
0.08
2
68.84
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018683
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022389
6751400 - 6863801
112402