About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67901739_67901984_R

Intron Information:

Intron Rank:
151600
Intron Class:
major
Intron Phase:
Intron Coordinates:
67901739 - 67901984
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGATGG
5'SS Class:
major
3'SS Sequence:
TAATACTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
63.4
43.8
Major BPS
100
1.24
0.5
100
0
Major PPT
76
0.59
1
66.4
44.3
Minor 5ss
36.9
-1.5
3
39.2
46
Minor BPS
80
0.94
1.4
88.77
27.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029116
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045593
67901676 - 67905825
4150