About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6790426_6793584_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6790426 - 6793584
Intron Length:
3159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTGATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
TGCTCCTTGATA
Flanking Amino Acid:
SVPRKQRGQKKSRSSIASCT
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
73.5
0.53
0.9
67.9
36.8
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
74
0.75
1.2
74.95
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018683
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022389
6751400 - 6863801
112402