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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67905309_67905752_R

Intron Information:

Intron Rank:
151603
Intron Class:
major
Intron Phase:
Intron Coordinates:
67905309 - 67905752
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTTTACCCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
85.9
0.81
0.6
80.5
31.5
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
52.3
0.07
2
73.81
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029116
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045593
67901676 - 67905825
4150