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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67922528_67934979_F

Intron Information:

Intron Rank:
125593
Intron Class:
major
Intron Phase:
Intron Coordinates:
67922528 - 67934979
Intron Length:
12452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTAGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
ATCTTCTTAGTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.8
31.7
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
77.8
0.63
0.9
72.3
36.9
Minor 5ss
39.9
-1.1
2.8
51.4
45.5
Minor BPS
61.7
0.35
1.5
67.94
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017650
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044725
67922363 - 67935821
13459