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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67922528_67960796_F

Intron Information:

Intron Rank:
125592
Intron Class:
major
Intron Phase:
Intron Coordinates:
67922528 - 67960796
Intron Length:
38269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
AGTTCTTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.8
31.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
76.6
0.6
0.9
72.5
36.6
Minor 5ss
39.9
-1.1
2.8
51.4
45.5
Minor BPS
56.5
0.28
1.8
75.55
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017650
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042143
67919183 - 67961190
42008