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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67930316_67931118_R

Intron Information:

Intron Rank:
140237
Intron Class:
major
Intron Phase:
Intron Coordinates:
67930316 - 67931118
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
AATTCCATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.2
27
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
85.3
0.79
0.7
81.6
30.4
Minor 5ss
38.2
-1.3
2.8
50
46.3
Minor BPS
64.6
0.54
1.6
79.5
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022822
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046913
67930103 - 68000648
70546