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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68027534_68029741_R

Intron Information:

Intron Rank:
145794
Intron Class:
major
Intron Phase:
Intron Coordinates:
68027534 - 68029741
Intron Length:
2208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTACTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
ATTACTTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.1
82.6
29.9
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
75.7
0.58
0.9
69.3
36.2
Minor 5ss
32.4
-2
2.5
37
40.2
Minor BPS
49.2
-0
2
66.74
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025827
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047527
68027498 - 68038834
11337