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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68028869_68029741_R

Intron Information:

Intron Rank:
145792
Intron Class:
major
Intron Phase:
Intron Coordinates:
68028869 - 68029741
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTACTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.1
82.6
29.9
Major BPS
74.2
0.6
1
67
39.4
Major PPT
88.3
0.86
0.7
83
25.5
Minor 5ss
32.4
-2
2.5
37
40.2
Minor BPS
70.3
0.72
1.7
89.65
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025827
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028616
68028754 - 68038834
10081