Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68029790_68038723_R

Intron Information:

Intron Rank:

145793

Intron Class:

major

Intron Phase:

Intron Coordinates:

68029790 - 68038723

Intron Length:

8934

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGGA

5'SS Class:

major

3'SS Sequence:

TGTTTTACTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATCAA

U12 Branch Point Sequence:

TTTCCCCTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.71

66.1

40.1

Major BPS

71.2

0.53

72.3

32.8

Major PPT

83.6

0.76

0.8

77.7

35.4

Minor 5ss

28.4

-2.5

3.5

38.3

46.7

Minor BPS

65.8

0.36

1.7

73.93

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025827

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047527

68027498 - 68038834

11337

ENSAPLT00000028616

68028754 - 68038834

10081