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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68040113_68040659_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
68040113 - 68040659
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGGT
5'SS Class:
major
3'SS Sequence:
CACTACTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TTTTGTTTACAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
61
44.1
Major BPS
72.8
0.57
1
81
30.3
Major PPT
64.1
0.32
1
57.2
37.1
Minor 5ss
36.6
-1.5
3.7
56.7
47.4
Minor BPS
51.6
0.03
2.1
70.99
40.7

Associated Gene:

Gene:
SLC35B3
Ensembl Gene ID:
ENSAPLG00000002812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045923
68039476 - 68062045
22570