Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68040120_68043593_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

68040120 - 68043593

Intron Length:

3474

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGGCCG

5'SS Class:

major

3'SS Sequence:

TGTTTCTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTTAT

U12 Branch Point Sequence:

TCTTGTCTGATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.1

44.7

Major BPS

72.5

0.56

1.2

63.4

Major PPT

90.6

0.91

0.7

88.7

28.3

Minor 5ss

24.2

-3

3.2

29.7

43.3

Minor BPS

48.1

-0

2.1

70.92

Associated Gene:

Gene:

SLC35B3

Ensembl Gene ID:

ENSAPLG00000002812

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044087

68039476 - 68062045

22570

ENSAPLT00000002859

68039476 - 68081904

42429