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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68043873_68045238_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68043873 - 68045238
Intron Length:
1366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
TTTGTTTTTATA
Flanking Amino Acid:
MFYLIYGYLQELIFSVEGFK
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
88.1
0.86
0.7
84.2
30.9
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
55.5
0.17
1.7
69.65
37.1

Associated Gene:

Gene:
SLC35B3
Ensembl Gene ID:
ENSAPLG00000002812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044087
68039476 - 68062045
22570
ENSAPLT00000035869
68039476 - 68061939
22464
ENSAPLT00000002859
68039476 - 68081904
42429
ENSAPLT00000045923
68039476 - 68062045
22570