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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68045361_68047201_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68045361 - 68047201
Intron Length:
1841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
GTGTCTGTAATA
Flanking Amino Acid:
ELQLVQDKRRRIPGKTYMMI
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
81.9
0.72
0.8
77.6
36.1
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
55.5
0.17
2
67.36
39.9

Associated Gene:

Gene:
SLC35B3
Ensembl Gene ID:
ENSAPLG00000002812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044087
68039476 - 68062045
22570
ENSAPLT00000035869
68039476 - 68061939
22464
ENSAPLT00000002859
68039476 - 68081904
42429
ENSAPLT00000045923
68039476 - 68062045
22570