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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68053713_68056061_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68053713 - 68056061
Intron Length:
2349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATACC
5'SS Class:
major
3'SS Sequence:
TAAACTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTCTCTTAAAC
Flanking Amino Acid:
KLHNGSNSEMVLYSYSIGFL
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.9
34.6
Major BPS
79
0.72
1
78.4
31.2
Major PPT
65.5
0.35
1
56
43.8
Minor 5ss
36.5
-1.5
2.8
43.6
37.8
Minor BPS
74.1
0.74
1.3
81.08
32.4

Associated Gene:

Gene:
SLC35B3
Ensembl Gene ID:
ENSAPLG00000002812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044087
68039476 - 68062045
22570
ENSAPLT00000035869
68039476 - 68061939
22464
ENSAPLT00000002859
68039476 - 68081904
42429
ENSAPLT00000045923
68039476 - 68062045
22570