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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68056155_68056583_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68056155 - 68056583
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTCCTAACA
Flanking Amino Acid:
LSPAVTFCSKHPVQTYGYAF
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75
35.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
31.6
-2.1
3.3
41.1
45.4
Minor BPS
71.5
0.67
1.6
82.38
31.7

Associated Gene:

Gene:
SLC35B3
Ensembl Gene ID:
ENSAPLG00000002812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045923
68039476 - 68062045
22570
ENSAPLT00000044087
68039476 - 68062045
22570
ENSAPLT00000035869
68039476 - 68061939
22464
ENSAPLT00000002859
68039476 - 68081904
42429