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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68056696_68058824_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68056696 - 68058824
Intron Length:
2129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
CTGTCAAGAACA
Flanking Amino Acid:
KIFGALLAVTGYLFFKISHK
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
65
0.37
1.3
75
40
Major PPT
79.7
0.67
0.8
77.5
30.4
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
47.4
-0.2
2
62.65
43

Associated Gene:

Gene:
SLC35B3
Ensembl Gene ID:
ENSAPLG00000002812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035869
68039476 - 68061939
22464