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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68056696_68060890_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68056696 - 68060890
Intron Length:
4195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAATTATTAAAG
Flanking Amino Acid:
KIFGALLAVTVTTGRKAMTI
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
90
0.9
0.6
85.3
22
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
49.7
-0.1
1.7
54.59
39.6

Associated Gene:

Gene:
SLC35B3
Ensembl Gene ID:
ENSAPLG00000002812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045923
68039476 - 68062045
22570
ENSAPLT00000044087
68039476 - 68062045
22570
ENSAPLT00000002859
68039476 - 68081904
42429