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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68058937_68060890_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68058937 - 68060890
Intron Length:
1954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAATTATTAAAG
Flanking Amino Acid:
SLFPQQLVSASNNRKKSNDH
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
90
0.9
0.6
85.3
22
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
49.7
-0.1
1.7
54.59
39.6

Associated Gene:

Gene:
SLC35B3
Ensembl Gene ID:
ENSAPLG00000002812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035869
68039476 - 68061939
22464