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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68060961_68061894_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68060961 - 68061894
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
CCCTCCCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
SVLCKTIHIPVCVVRLAGCS
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
75.6
0.58
0.7
72.9
25.3
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
SLC35B3
Ensembl Gene ID:
ENSAPLG00000002812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045923
68039476 - 68062045
22570
ENSAPLT00000044087
68039476 - 68062045
22570
ENSAPLT00000035869
68039476 - 68061939
22464