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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68060961_68081822_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68060961 - 68081822
Intron Length:
20862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TGTCTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTAGTT
Flanking Amino Acid:
FLFFAKPFTFHFNCIRSWEC
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.7
0.8
0.7
84.8
30
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
62.4
0.47
1.8
81.07
40.9

Associated Gene:

Gene:
SLC35B3
Ensembl Gene ID:
ENSAPLG00000002812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002859
68039476 - 68081904
42429