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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68089885_68090110_F

Intron Information:

Intron Rank:
133914
Intron Class:
major
Intron Phase:
Intron Coordinates:
68089885 - 68090110
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGACAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
0.9
69.5
36.5
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
28.3
-2.5
3.1
36.2
41.7
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021986
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022488
68085996 - 68090349
4354