Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6818312_6863625_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6818312 - 6863625

Intron Length:

45314

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

CTTGTGTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAAAAA

U12 Branch Point Sequence:

AACAGCTTAAAA

Flanking Amino Acid:

GASPFQRARKKPRSRGKTAV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

80.5

27.6

Major BPS

61.4

0.28

1.1

67.9

34.4

Major PPT

82.4

0.73

0.9

76.3

37.7

Minor 5ss

42.2

-0.9

2.7

50.9

39.6

Minor BPS

48.7

-0.1

1.9

57.19

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018683

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022389

6751400 - 6863801

112402