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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68278089_68283207_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68278089 - 68283207
Intron Length:
5119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGGGTATC
5'SS Class:
major
3'SS Sequence:
CATTCTGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AGCTACTTAAAA
Flanking Amino Acid:
APHFVMFFAPWCGHCQRLQP
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
74
36.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
74.3
0.55
0.9
67.9
37.3
Minor 5ss
33.6
-1.9
3.1
41.6
39.5
Minor BPS
58.9
0.27
1.6
65.26
40.4

Associated Gene:

Gene:
TXNDC5
Ensembl Gene ID:
ENSAPLG00000003126
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003198
68277874 - 68298329
20456