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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68285395_68286737_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68285395 - 68286737
Intron Length:
1343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTCTCATGAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATGAATA
Flanking Amino Acid:
MLEKLNEEPSDPEAVAEPPK
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
34.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
65.6
0.35
1
62.6
37.5
Minor 5ss
34.9
-1.7
3.3
49.9
46.4
Minor BPS
61.4
0.35
1.7
73.52
38.3

Associated Gene:

Gene:
TXNDC5
Ensembl Gene ID:
ENSAPLG00000003126
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003198
68277874 - 68298329
20456