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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68288826_68291030_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68288826 - 68291030
Intron Length:
2205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCAAAATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAAAA
Flanking Amino Acid:
EHSESVKIGKVDCTQHYEVC
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
66.6
0.37
1
60.8
39.2
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
63.5
0.42
1.6
76.4
34.4

Associated Gene:

Gene:
TXNDC5
Ensembl Gene ID:
ENSAPLG00000003126
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003198
68277874 - 68298329
20456