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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68291118_68292669_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68291118 - 68292669
Intron Length:
1552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTACTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TATTTGCTACTT
Flanking Amino Acid:
TLLWFRNGEKGDQYKGKRDF
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
76
0.59
0.9
70.7
35.1
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
44
-0.3
2.4
68.95
42.5

Associated Gene:

Gene:
TXNDC5
Ensembl Gene ID:
ENSAPLG00000003126
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003198
68277874 - 68298329
20456