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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68311177_68312016_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68311177 - 68312016
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTCAT
5'SS Class:
major
3'SS Sequence:
ATTTGATTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTCCATTTGATT
Flanking Amino Acid:
GLQLSVVTQDGFSVNPREAG
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
69.2
43.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
69.5
0.44
1.1
68.9
40.7
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
56.4
0.28
1.5
73.08
38.2

Associated Gene:

Gene:
BMP6
Ensembl Gene ID:
ENSAPLG00000003652
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026178
68299769 - 68388045
88277