About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68312166_68326196_R


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
68312166 - 68326196

Intron Length:
14031

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAGGCAAG

5'SS Class:
major

3'SS Sequence:
TTTTCTTCTGCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTGTTAT

U12 Branch Point Sequence:
TGTCTTGTTATT

Flanking Amino Acid:
IYQVLQEHPNRSSDLFLLDT

Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.7
0.7
1
68.8
43.8

Major BPS
81.3
0.78
1.1
71.7
44.6

Major PPT
92.8
0.96
0.6
88.9
20.3

Minor 5ss
37.3
-1.4
3.1
47.3
48.3

Minor BPS
44.1
-0.3
2.2
64.98
39.9

Associated Gene:

Gene:
BMP6

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

68301070 - 68387810
86741