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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68326390_68387368_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68326390 - 68387368
Intron Length:
60979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCATCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTCTCCTCATCT
Flanking Amino Acid:
ADMVMSFVNLVEYDKEFTPH
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
79.3
0.66
0.8
73.3
30.4
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
58.3
0.34
1.9
75.91
46.6

Associated Gene:

Gene:
BMP6
Ensembl Gene ID:
ENSAPLG00000003652
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003733
68301070 - 68387810
86741