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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68461617_68462512_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68461617 - 68462512
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTGC
5'SS Class:
major
3'SS Sequence:
TATTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TTTTCTGTTATT
Flanking Amino Acid:
EMLKSMEDLKMKATKIELLE
Intron Amino Acid Position:
1034

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
66
40.9
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
86.3
0.82
0.8
80.9
36.4
Minor 5ss
44.3
-0.6
2.8
59.8
44.8
Minor BPS
55.4
0.25
2.3
83.31
38.3

Associated Gene:

Gene:
DSP
Ensembl Gene ID:
ENSAPLG00000003818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003909
68454594 - 68492499
37906