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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68462612_68463267_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
68462612 - 68463267
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCTTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTCTTTTCAAG
Flanking Amino Acid:
QSPAVLILQEASEAQARYIE
Intron Amino Acid Position:
1001

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.9
36.3
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
83.5
0.75
0.9
83.1
32.3
Minor 5ss
72.3
0.75
1.7
78.8
35.5
Minor BPS
48.7
-0.2
1.9
61.29
40.8

Associated Gene:

Gene:
DSP
Ensembl Gene ID:
ENSAPLG00000003818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003909
68454594 - 68492499
37906