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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68466002_68467324_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68466002 - 68467324
Intron Length:
1323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATGTTATTATTT
Flanking Amino Acid:
KVEAYRACLKKMKADLNMKK
Intron Amino Acid Position:
818

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
92.5
0.96
0.6
85.6
29.1
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
51.3
0.12
1.8
70.84
40.6

Associated Gene:

Gene:
DSP
Ensembl Gene ID:
ENSAPLG00000003818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003909
68454594 - 68492499
37906