About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68467464_68467805_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68467464 - 68467805
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTATTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTTATTATTT
Flanking Amino Acid:
INGVSAGYLDSLNVLRCLLQ
Intron Amino Acid Position:
771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.3
0.73
0.8
78.6
34.3
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
56.6
0.29
1.8
77.46
39.2

Associated Gene:

Gene:
DSP
Ensembl Gene ID:
ENSAPLG00000003818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003909
68454594 - 68492499
37906