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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68467973_68468763_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68467973 - 68468763
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AACGTGTTAATC
Flanking Amino Acid:
DFSVRIQELEGVQNDSQIMA
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
81.8
38.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
81
0.7
0.7
80.8
24.4
Minor 5ss
44.9
-0.5
2.6
59.7
44.8
Minor BPS
46.2
-0.3
2.1
52.63
39.6

Associated Gene:

Gene:
DSP
Ensembl Gene ID:
ENSAPLG00000003818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003909
68454594 - 68492499
37906