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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68470917_68472430_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68470917 - 68472430
Intron Length:
1514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
GTATTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TATTTCTTACAG
Flanking Amino Acid:
KALCDYKQDLKTVRKGDECI
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
65
41.3
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
82.9
0.74
0.9
76.7
37.3
Minor 5ss
38.7
-1.3
3.4
53.3
45.8
Minor BPS
58.1
0.12
1.8
65.42
42.2

Associated Gene:

Gene:
DSP
Ensembl Gene ID:
ENSAPLG00000003818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003909
68454594 - 68492499
37906