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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68473620_68474165_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68473620 - 68474165
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TGCAACTGAAAT
Flanking Amino Acid:
HLKENAAYFQFFEEAQATEC
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
92.2
0.95
0.5
89.3
19.6
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
48.1
-0
1.8
65.37
44

Associated Gene:

Gene:
DSP
Ensembl Gene ID:
ENSAPLG00000003818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003909
68454594 - 68492499
37906