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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68477743_68478849_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68477743 - 68478849
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTACT
5'SS Class:
major
3'SS Sequence:
GTTTCTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
GCACGCTAAATA
Flanking Amino Acid:
WHLDKVKTDLREKAAVHQLE
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
79
34.2
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
83.5
0.75
0.9
80.8
36.8
Minor 5ss
38.6
-1.3
2.8
49.9
40.2
Minor BPS
44.5
-0.4
2
50.02
41.4

Associated Gene:

Gene:
DSP
Ensembl Gene ID:
ENSAPLG00000003818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003909
68454594 - 68492499
37906