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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68481855_68482207_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68481855 - 68482207
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGAAA
5'SS Class:
major
3'SS Sequence:
CCTTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAGAA
U12 Branch Point Sequence:
TTTCCTTGTAGA
Flanking Amino Acid:
MNQPCEMYQKRLLQLQEQMR
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
67.9
38.7
Major BPS
54.8
0.12
1.2
52.7
43.2
Major PPT
83.8
0.76
0.7
80.7
24.6
Minor 5ss
30.6
-2.2
3.3
39.7
45.9
Minor BPS
47.2
-0.2
2
65.45
40.6

Associated Gene:

Gene:
DSP
Ensembl Gene ID:
ENSAPLG00000003818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003909
68454594 - 68492499
37906