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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68482357_68483863_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68482357 - 68483863
Intron Length:
1507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TTTTTAATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
LMRAELIVQPELKYGDGVQI
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.5
0.78
0.8
83.2
32
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
DSP
Ensembl Gene ID:
ENSAPLG00000003818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003909
68454594 - 68492499
37906