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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68534188_68535213_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68534188 - 68535213
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCTGG
5'SS Class:
major
3'SS Sequence:
TGATTCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTGGCTTTAAAT
Flanking Amino Acid:
LPTEVTMDKKERKKMVKEAQ
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.3
60.6
46.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.6
0.64
0.9
73.9
36.5
Minor 5ss
38.7
-1.3
2.9
47.8
47.7
Minor BPS
61
0.42
1.6
72.41
44.8

Associated Gene:

Gene:
RIOK1
Ensembl Gene ID:
ENSAPLG00000004196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042087
68532301 - 68546965
14665