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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68534643_68535213_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68534643 - 68535213
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCTGG
5'SS Class:
major
3'SS Sequence:
TTTTTTATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTC
Flanking Amino Acid:
LPTEVTMDKKLSIVSALSGR
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.3
60.6
46.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.5
0.96
0.7
85.7
33.4
Minor 5ss
38.7
-1.3
2.9
47.8
47.7
Minor BPS
67.3
0.52
1.5
77.16
33.3

Associated Gene:

Gene:
RIOK1
Ensembl Gene ID:
ENSAPLG00000004196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004356
68534523 - 68546965
12443