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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68535355_68535990_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68535355 - 68535990
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCATTTTATCT
Flanking Amino Acid:
LKKDLSGVQKIPALLEKADE
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90
0.9
0.7
84.5
30.1
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
58.9
0.36
1.6
75.61
41.6

Associated Gene:

Gene:
RIOK1
Ensembl Gene ID:
ENSAPLG00000004196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042087
68532301 - 68546965
14665
ENSAPLT00000004356
68534523 - 68546965
12443