Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68542650_68543183_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

68542650 - 68543183

Intron Length:

534

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGATTCTT

5'SS Class:

strong_major

3'SS Sequence:

TCCCATGTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

CTGTATTTATTT

Flanking Amino Acid:

WAEKEMRNLIRLNTARIPCP

Intron Amino Acid Position:

152

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

79.8

35.1

Major BPS

88.7

0.96

0.8

36.5

Major PPT

74.4

0.55

0.9

67.3

37.6

Minor 5ss

34.8

-1.7

3.1

50.1

46.1

Minor BPS

50.6

0.1

1.8

68.02

43.7

Associated Gene:

Gene:

RIOK1

Ensembl Gene ID:

ENSAPLG00000004196

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042087

68532301 - 68546965

14665

ENSAPLT00000004356

68534523 - 68546965

12443