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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68543265_68543394_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68543265 - 68543394
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
DRDKYVSGEFRFRHGYCKGN
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
RIOK1
Ensembl Gene ID:
ENSAPLG00000004196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042087
68532301 - 68546965
14665
ENSAPLT00000004356
68534523 - 68546965
12443