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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68544577_68545254_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
68544577 - 68545254
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TATTGAACTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
CTGTATTGAACT
Flanking Amino Acid:
DKSDRATVEQVLDPRTRMIL
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
50.8
0.02
1.7
60.5
44.6
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
57.3
0.31
1.7
73.53
43.4

Associated Gene:

Gene:
RIOK1
Ensembl Gene ID:
ENSAPLG00000004196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004356
68534523 - 68546965
12443
ENSAPLT00000042087
68532301 - 68546965
14665