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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68560181_68565124_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68560181 - 68565124
Intron Length:
4944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
AGGTATTGAAAA
Flanking Amino Acid:
PVGYITVTHTGSGLLVAAQD
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
81.6
0.71
0.8
77.3
31.5
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
46.6
-0.2
1.7
54.03
37.7

Associated Gene:

Gene:
SSR1
Ensembl Gene ID:
ENSAPLG00000004473
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017578
68559895 - 68573079
13185