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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68565244_68566505_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68565244 - 68566505
Intron Length:
1262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAACTGTA
5'SS Class:
major
3'SS Sequence:
TCTCTTGTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GGGCTTTTAAAA
Flanking Amino Acid:
EVEEDEPTDLTEEKEEEDLS
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.2
36.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.1
0.61
0.8
76.4
32.2
Minor 5ss
42
-0.9
3.2
54.9
44.7
Minor BPS
50.8
0.02
1.4
55.23
37.1

Associated Gene:

Gene:
SSR1
Ensembl Gene ID:
ENSAPLG00000004473
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026899
68563666 - 68583060
19395
ENSAPLT00000026695
68563213 - 68583325
20113
ENSAPLT00000017578
68559895 - 68573079
13185
ENSAPLT00000004617
68563666 - 68578113
14448
ENSAPLT00000039489
68563213 - 68583161
19949