Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_68566809_68566889_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

68566809 - 68566889

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGCTTC

5'SS Class:

major

3'SS Sequence:

TCAAGACTACCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

GTACCCTCAAGA

Flanking Amino Acid:

FPANNIVKFLFYIQNFTALP

Intron Amino Acid Position:

108

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.2

0.55

1.1

65.8

Major BPS

83.8

0.84

73.6

41.8

Major PPT

58.3

0.19

1.1

48.4

43.7

Minor 5ss

47.2

-0.3

3.1

63.7

42.5

Minor BPS

51.3

0.04

1.9

63.35

42.2

Associated Gene:

Gene:

SSR1

Ensembl Gene ID:

ENSAPLG00000004473

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026899

68563666 - 68583060

19395